KWSN Orbiting Fortress

LanDroid · Posted: Sat Apr 30, 2016 9:00 pm Post subject: CPU PotM May 2016 => Rosetta

In a very close vote, Rosetta is the CPU Project of the Month for May. Two votes for Ralph, the dead test project for Rosetta, were added to two direct votes for Rosetta. A little sleazy perhaps, but as you may have noticed it's that kind of a year. Shocked

Rosetta is involved in a wide range of research related to proteins. Here are two links to Rosetta research on malaria, anthrax, HIV, Alzheimer's, influenza, and cancer.
http://boinc.bakerlab.org/rosetta/rah_medical_relevance.php
http://cen.acs.org/articles/94/i6/Designer-Protein-Promising-Antiflu-Agent.html

Back up projects:
Universe
VGTU@Home

Rosetta starting stats:
18th Place
228,876,412. Total points
50,725. Average daily production

LanDroid · Posted: Sat Apr 30, 2016 9:38 pm Post subject:

I just noticed that by shrubbing Rosetta, KWSN will be helping that project and BOINC in the CASP12 competition. This happens every two years where teams compete to see which methods produce the most accurate protein structure models. Rosetta won first place in CASP11 two years ago.

http://www.predictioncenter.org/casprol/index.cgi
http://boinc.bakerlab.org/rosetta/forum_thread.php?id=6574

#Onfire

Plomos · Prince Joined: 26 Apr 2011 Posts: 859

I remember being in CASP10 I think a while back. Had an issue getting work over the last several hours but it seems to have cleared up and is moving along now
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LanDroid · Posted: Sat May 07, 2016 8:28 am Post subject:

Milestones:
neerav 650,000
Pooh Bear 27 400,000
Plomos 70,000
Tommy 5,000
ecihos 5,000

LanDroid · Posted: Sun May 08, 2016 5:11 pm Post subject:

Some of these Rosetta WUs creep me out, they begin with the words "ploop_ploop." Don't even wanna know what's going with those. Shocked

I think the WUs containing the word "abinitio" might be for the CASP12 competition, not sure. Not any info about it on the Rosetta site.
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[img]http://stats.free-dc.org/cpidtagb.php?cpid=6533a276b3a1dde393be350eb3cfda70&theme=16&cols=5/.png[/img]
[img]http://stats.free-dc.org/badgesbanner.php?cpid=6533a276b3a1dde393be350eb3cfda70/.png[/img]

Plomos · Prince Joined: 26 Apr 2011 Posts: 859

From what I can tell CASP first releases units that are server only in order to test some things out and make sure that it is going to be viable for the rest of us. Then at some point they release units for the regular users like us so that many different variations can be tried.

See - http://www.predictioncenter.org/casp12/targetlist.cgi

and http://boinc.bakerlab.org/rosetta/forum_thread.php?id=6822
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LanDroid · Posted: Sat May 14, 2016 4:06 am Post subject:

LanDroid · Posted: Sat May 14, 2016 8:01 am Post subject:

Milestones:
William Dolgae 1,600,000
Trusty Steed, Patsy 650,000
Yankton 250,000
Les 90,000
Sir Mifun Fat in a Right Place 90,000
Plomos 80,000
The_MagnuM 60,000
Tom K 40,000
shamarpa 20,000

LanDroid · Posted: Sat May 21, 2016 1:32 am Post subject:

I'm crunching some WUs with "CASP 12" in the file name. Also some with "krypton." I hope that's better than the previous "ploop_ploop" WUs. Laughing

HEY! GRAPHICS! Just noticed if you click on an active WU, then click the "Show Graphics" button, it displays some pretty protein folding and an energy graph...
Einstein has this graphics feature too, not many projects still do this...
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[img]http://stats.free-dc.org/cpidtagb.php?cpid=6533a276b3a1dde393be350eb3cfda70&theme=16&cols=5/.png[/img]
[img]http://stats.free-dc.org/badgesbanner.php?cpid=6533a276b3a1dde393be350eb3cfda70/.png[/img]

Plomos · Prince Joined: 26 Apr 2011 Posts: 859

So krypton is one of the project scientists/admins over at rosetta and he is helping to make sure that the wu's get named in a way that we will know they are casp units. Rosetta has had graphics for as long as I've been crunching it. I use it to check how many models a unit gets through since rosetta gives more points if your machine manages to crunch a higher number of models because it gives them more data to use on their end
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LanDroid · Posted: Thu Jun 02, 2016 6:21 pm Post subject:

Final stats:
18th place +/- 0
232,122,114. total points +3,245,702.

Milestones:
bodamcity 8,500,000
Black Knight - It's just a flesh wound. 1,800,000
BmfCb 550,000
Pooh Bear 27 450,000
Yankton 450,000
Williamd007 350,000
rock 350,000
LanDroid 300,000
Janusz 150,000
Ixsus 150,000
Sir Mifun Fat in a Right Place 100,000
Plomos 100,000
agogale 100,000
The_MagnuM 70,000
Tom K 60,000
SpongeBob SquarePants 60,000
Miche 60,000
goofy 40,000
iriemon 20,000
Mikachu 10,000
Yann Weber 10,000
Tommy 7,000
Renata Vine 7,000
ecihos 6,000
kattfiller 2,000