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Rosetta@home

 
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alpha_fruit
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PostPosted: Fri Jul 28, 2006 2:19 pm    Post subject: Rosetta@home Reply with quote

I have my PC set for Rosetta to use 90% of my PC, yet it keeps saying "work suspended because computer is over committed". I am only running Folding@home with Rosetta. Can someone tell me what is going on? Please?

I'm ready to stop this project if I can't get it to working correctly.
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jonnyv
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PostPosted: Fri Jul 28, 2006 2:57 pm    Post subject: Reply with quote

That's BOINC telling you that it thinks it has too many work units to be able to complete them all before their deadlines. It's gone into a panic mode where it won't grab any more work units until the queues have been depleted to a level that BOINC thinks is safe. Folding is going to affect the amount of work that BOINC can get done, but after awhile, BOINC will get an idea of how much work it can get done and adjust how much work it requests.
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alpha_fruit
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PostPosted: Fri Jul 28, 2006 4:34 pm    Post subject: Reply with quote

Thanks, so you think it will work itself out? I have had several WU's not report on time and it tells me to abort them as they won't finish on time.

So just wait and see?
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Grawlfang
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PostPosted: Fri Jul 28, 2006 5:16 pm    Post subject: Reply with quote

Happy Days (for me) #ni-1

I've finally made the half century.

Ni! Ni! and thrice Ni!
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Killerrabbit
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PostPosted: Fri Jul 28, 2006 5:55 pm    Post subject: Reply with quote

Alpha_Fruit, it depends on how long the WU's are taking and how far you are from the deadline. My BOINC Manager and Daemon does this often since I run so many projects and I have had no problem with any of the deadlines.

Ni
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alpha_fruit
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PostPosted: Sat Jul 29, 2006 6:40 am    Post subject: Reply with quote

Part of the messages.... My PC is not over committed. I called my PC guy and he had me do some things and said it is only 35% committed, so why do I continue getting this?

7/28/2006 3:14:08 PM|rosetta@home|Started download of file hom001_t385_.fasta.gz
7/28/2006 3:14:13 PM|rosetta@home|Finished download of file hom001_t385_.fasta.gz
7/28/2006 3:14:13 PM|rosetta@home|Throughput 46 bytes/sec
7/28/2006 3:14:13 PM|rosetta@home|Started download of file t385_4_1mojA__283.pdb.gz
7/28/2006 3:14:18 PM|rosetta@home|Finished download of file t385_4_1mojA__283.pdb.gz
7/28/2006 3:14:18 PM|rosetta@home|Throughput 3189 bytes/sec
7/28/2006 3:14:18 PM|rosetta@home|Started download of file t385_4_1mojA__283.loopfile.gz
7/28/2006 3:14:22 PM|rosetta@home|Finished download of file t385_4_1mojA__283.loopfile.gz
7/28/2006 3:14:22 PM|rosetta@home|Throughput 20 bytes/sec
7/28/2006 3:14:22 PM|rosetta@home|Started download of file paths_200_t385.txt
7/28/2006 3:14:26 PM|rosetta@home|Finished download of file paths_200_t385.txt
7/28/2006 3:14:26 PM|rosetta@home|Throughput 395 bytes/sec
7/28/2006 3:14:28 PM|rosetta@home|Finished download of file boinc_hom001_aat385_03_05.200_v1_3.gz
7/28/2006 3:14:28 PM|rosetta@home|Throughput 31244 bytes/sec
7/28/2006 3:14:29 PM||Rescheduling CPU: files downloaded
7/28/2006 3:14:29 PM||Using earliest-deadline-first scheduling because computer is overcommitted.
7/28/2006 3:14:29 PM|rosetta@home|Starting task FRA_t385_CASP7_hom001_5_t385_4_1mojA_IGNORE_THE_REST_283_1052_1_0 using rosetta version 525
7/28/2006 3:14:33 PM||Suspending work fetch because computer is overcommitted.
7/29/2006 7:33:20 AM|rosetta@home|Sending scheduler request to http://boinc.bakerlab.org/rosetta_cgi/cgi
7/29/2006 7:33:20 AM|rosetta@home|Reason: Requested by user
7/29/2006 7:33:20 AM|rosetta@home|(not requesting new work or reporting completed tasks)
7/29/2006 7:33:25 AM|rosetta@home|Scheduler request succeeded
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PostPosted: Sat Jul 29, 2006 11:16 am    Post subject: Reply with quote

Alpha, you can set the length of time rosetta will run a shrub for, you can do this from the rosetta settings link on the preference page.

why don't you set the runtime to 1 hour. save this and update the project from boinc manager. this might clear the backlog quicker


#ni-1 #ni-1
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jonnyv
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PostPosted: Sat Jul 29, 2006 4:32 pm    Post subject: Reply with quote

alpha_fruit wrote:
Thanks, so you think it will work itself out? I have had several WU's not report on time and it tells me to abort them as they won't finish on time.

So just wait and see?


Yes, it'll sort itself out eventually.
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PostPosted: Sat Jul 29, 2006 4:37 pm    Post subject: Reply with quote

alpha_fruit wrote:
Part of the messages.... My PC is not over committed. I called my PC guy and he had me do some things and said it is only 35% committed, so why do I continue getting this?

7/28/2006 3:14:08 PM|rosetta@home|Started download of file hom001_t385_.fasta.gz
7/28/2006 3:14:13 PM|rosetta@home|Finished download of file hom001_t385_.fasta.gz
7/28/2006 3:14:13 PM|rosetta@home|Throughput 46 bytes/sec
7/28/2006 3:14:13 PM|rosetta@home|Started download of file t385_4_1mojA__283.pdb.gz
7/28/2006 3:14:18 PM|rosetta@home|Finished download of file t385_4_1mojA__283.pdb.gz
7/28/2006 3:14:18 PM|rosetta@home|Throughput 3189 bytes/sec
7/28/2006 3:14:18 PM|rosetta@home|Started download of file t385_4_1mojA__283.loopfile.gz
7/28/2006 3:14:22 PM|rosetta@home|Finished download of file t385_4_1mojA__283.loopfile.gz
7/28/2006 3:14:22 PM|rosetta@home|Throughput 20 bytes/sec
7/28/2006 3:14:22 PM|rosetta@home|Started download of file paths_200_t385.txt
7/28/2006 3:14:26 PM|rosetta@home|Finished download of file paths_200_t385.txt
7/28/2006 3:14:26 PM|rosetta@home|Throughput 395 bytes/sec
7/28/2006 3:14:28 PM|rosetta@home|Finished download of file boinc_hom001_aat385_03_05.200_v1_3.gz
7/28/2006 3:14:28 PM|rosetta@home|Throughput 31244 bytes/sec
7/28/2006 3:14:29 PM||Rescheduling CPU: files downloaded
7/28/2006 3:14:29 PM||Using earliest-deadline-first scheduling because computer is overcommitted.
7/28/2006 3:14:29 PM|rosetta@home|Starting task FRA_t385_CASP7_hom001_5_t385_4_1mojA_IGNORE_THE_REST_283_1052_1_0 using rosetta version 525
7/28/2006 3:14:33 PM||Suspending work fetch because computer is overcommitted.
7/29/2006 7:33:20 AM|rosetta@home|Sending scheduler request to http://boinc.bakerlab.org/rosetta_cgi/cgi
7/29/2006 7:33:20 AM|rosetta@home|Reason: Requested by user
7/29/2006 7:33:20 AM|rosetta@home|(not requesting new work or reporting completed tasks)
7/29/2006 7:33:25 AM|rosetta@home|Scheduler request succeeded


All those messages mean is that BOINC thinks it has more workunits than it can complete before the deadlines. That's it. Without knowing exactly what your pc guy had you do I can't say for sure, but I think that 35% number has very little to do with your BOINC messages. If you don't want to see those messages any more, shut down folding, and BOINC will be able to clear its queue faster.
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